Package: wizaRdry 0.6.16

Joshua G. Kenney

wizaRdry: A Magical Framework for Collaborative & Reproducible Data Analysis

A comprehensive data analysis framework for NIH-funded research that streamlines workflows for both data cleaning and preparing NIH Data Archive ('NDA') submission templates. Provides unified access to multiple data sources ('REDCap', 'MongoDB', 'Qualtrics', 'SQL', 'ORACLE') through interfaces to their APIs, with specialized functions for data cleaning, filtering, merging, and parsing. Features automatic validation, field harmonization, and memory-aware processing to enhance reproducibility in multi-site collaborative research as described in Mittal et al. (2021) <doi:10.20900/jpbs.20210011>.

Authors:Joshua G. Kenney [aut, cre], Trevor F. Williams [aut], Minerva K. Pappu [aut], Michael J. Spilka [aut], Danielle N. Pratt [ctb], Victor J. Pokorny [ctb], Santiago Castiello de Obeso [ctb], Praveen Suthaharan [ctb], Christian R. Horgan [ctb]

wizaRdry_0.6.16.tar.gz
wizaRdry_0.6.16.zip(r-4.7)wizaRdry_0.6.16.zip(r-4.6)wizaRdry_0.6.16.zip(r-4.5)
wizaRdry_0.6.16.tgz(r-4.6-any)wizaRdry_0.6.16.tgz(r-4.5-any)
wizaRdry_0.6.16.tar.gz(r-4.7-any)wizaRdry_0.6.16.tar.gz(r-4.6-any)
wizaRdry_0.6.16.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
wizaRdry/json (API)
NEWS

# Install 'wizaRdry' in R:
install.packages('wizaRdry', repos = c('https://belieflab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/belieflab/wizardry/issues

On CRAN:

Conda:

5.00 score 2 stars 3 scripts 573 downloads 40 exports 89 dependencies

Last updated from:ec2c799678. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK193
source / vignettesOK183
linux-release-x86_64OK174
macos-release-arm64OK163
macos-oldrel-arm64OK150
windows-develOK111
windows-releaseOK102
windows-oldrelOK126
wasm-releaseOK141

Exports:cleancreateCsvcreateRdscreateSpssdataFilterdataMergedataRequestgetRedcapgetSurveygetTaskmeldmongomongo.indexmongo.runendandaRequestoracleoracle.descoracle.indexoracle.queryoracle.testqualtricsqualtrics.dictqualtrics.indexqualtrics.runeredcapredcap.dictredcap.indexredcap.runerunescrysiftsqlsql.descsql.indexsql.queryto.csvto.ndato.rdsto.sav

Dependencies:archiveaskpassaudiobackportsbeeprbitbit64blobbriocallrcheckmateclicliprcodetoolsconfigcpp11crayoncurldatawizardDBIdescdiffobjdigestdplyrevaluateforcatsfsfuturefuture.applygenericsglobalsgluehavenhighrhmshttrinsightjsonliteknitrlifecyclelistenvlubridatemagrittrmimemongoliteodbcopensslopenxlsxopenxlsx2otelparallellypillarpkgbuildpkgconfigpkgloadpraiseprettyunitsprocessxprogresspspurrrqualtRicsR6RcppreadrREDCapRrlangRMariaDBrprojrootrstudioapisjlabelledstringdiststringistringrsystestthattibbletidyrtidyselecttimechangetzdbutf8vctrsvroomwaldowithrxfunyamlzip

Readme and manuals

Help Manual

Help pageTopics
Generate clean data frames from cleaning scripts created in the ./clean directoryclean
Alias for 'to.csv' (DEPRECATED)createCsv
Alias for 'to.rds' (DEPRECATED)createRds
Alias for 'to.sav' (DEPRECATED)createSpss
Alias for 'sift' (DEPRECATED)dataFilter
Alias for 'meld' (DEPRECATED)dataMerge
Alias for 'clean' (DEPRECATED)dataRequest
Alias for 'redcap' (DEPRECATED)getRedcap
Alias for 'qualtrics' (DEPRECATED)getSurvey
Alias for 'mongo' (DEPRECATED)getTask
Merge two or more data frames magically according to their candidate keymeld
Fetch data from MongoDB to be stored in a data frame - UPDATED VERSIONmongo
Display table of available MongoDB collectionsmongo.index
Parse composite MongoDB collection into component data frames by variable prefixmongo.rune
Generate validated NDA submission templates created in the ./nda directorynda
Alias for 'nda' (DEPRECATED)ndaRequest
Fetch data from Oracle database to be stored in a data frameoracle
Get Oracle table columns/metadataoracle.desc
Get a list of tables from the Oracle databaseoracle.index
Perform a direct Oracle query with minimal processingoracle.query
Test Oracle database connectionoracle.test
Retrieve Survey Data from Qualtricsqualtrics
Fetch Qualtrics survey metadata to be stored in data framequaltrics.dict
Display table of available Qualtrics surveysqualtrics.index
Parse composite Qualtrics survey into component data frames by variable prefixqualtrics.rune
Fetch data from REDCap to be stored in a data frameredcap
Fetch REDCap data dictionary to be stored in data frameredcap.dict
Display table of available REDCap instruments and their labelsredcap.index
Parse composite REDCap instrument into component data frames by variable prefixredcap.rune
Parse composite data frame into component data frames by variable prefixrune
Initialize the wizaRdry directory structure inside an R projectscry
Filter data frame by superkey parameters, rows, and columnssift
Fetch data from SQL database to be stored in a data framesql
Get SQL table columns/metadatasql.desc
Get a list of tables from the SQL databasesql.index
Perform a direct SQL query with minimal processingsql.query
Create .csv file from a data frameto.csv
Create NDA Submission Templateto.nda
Create .rds file from a data frameto.rds
Create .sav SPSS file from a data frameto.sav
Deprecated functions in wizaRdrywizaRdry-deprecated